#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04229/HG04229.cram --algo AlignmentStat 1000G/HG04229/QCmetrics/HG04229.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	329519161	329519161	1.000000	0	329375110	0.999563	48889193624	309399437	46101213604	44853196630	0.000000	0.005537	0.004904	0.000231	150.000000	328088664	0.996094	0	0.500507	0.007430	0.000000	
SECOND_OF_PAIR	329519161	329519161	1.000000	0	328152349	0.995852	48442185816	305741538	45495170287	44060499525	0.000000	0.006252	0.005510	0.000239	150.000000	328088664	0.999806	0	0.501545	0.007644	0.000000	
PAIR	659038322	659038322	1.000000	0	657527459	0.997707	97331379440	615140975	91596383891	88913696155	0.000000	0.005893	0.005205	0.000235	150.000000	656177328	0.997947	0	0.501025	0.007536	0.000000