#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA06989/NA06989.cram --algo AlignmentStat 1000G/NA06989/QCmetrics/NA06989.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	335755550	335755550	1.000000	0	335634057	0.999638	49878604703	317482111	47336963538	46307276152	0.000000	0.004663	0.004148	0.000226	150.000000	334763588	0.997406	0	0.500574	0.007983	0.000000	
SECOND_OF_PAIR	335755549	335755549	1.000000	0	334820469	0.997215	49507483301	314769943	46850326434	45756891214	0.000000	0.004934	0.004344	0.000233	150.000000	334763587	0.999830	0	0.500629	0.008314	0.000000	
PAIR	671511099	671511099	1.000000	0	670454526	0.998427	99386088004	632252054	94187289972	92064167366	0.000000	0.004798	0.004245	0.000229	150.000000	669527175	0.998617	0	0.500601	0.008148	0.000000