#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA11894/NA11894.cram --algo AlignmentStat 1000G/NA11894/QCmetrics/NA11894.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	382177169	382177169	1.000000	0	382098468	0.999794	56813828659	361607512	53959931147	53139930288	0.000000	0.003593	0.003058	0.000226	150.000000	381158147	0.997539	0	0.500561	0.007390	0.000000	
SECOND_OF_PAIR	382177169	382177169	1.000000	0	381200750	0.997445	56389503838	358141223	53367940663	52328154058	0.000000	0.004271	0.003632	0.000231	150.000000	381158147	0.999888	0	0.501088	0.007674	0.000000	
PAIR	764354338	764354338	1.000000	0	763299218	0.998620	113203332497	719748735	107327871810	105468084346	0.000000	0.003931	0.003343	0.000229	150.000000	762316294	0.998712	0	0.500824	0.007532	0.000000