#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA12043/NA12043.cram --algo AlignmentStat 1000G/NA12043/QCmetrics/NA12043.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	425761923	425761923	1.000000	0	425625689	0.999680	63244129204	399076753	59531215492	58524653408	0.000000	0.004455	0.003745	0.000239	150.000000	424649021	0.997705	0	0.500484	0.007896	0.000000	
SECOND_OF_PAIR	425761923	425761923	1.000000	0	424712086	0.997534	62749354608	395671671	58887806595	57867929768	0.000000	0.004566	0.003779	0.000246	150.000000	424649021	0.999852	0	0.500605	0.008425	0.000000	
PAIR	851523846	851523846	1.000000	0	850337775	0.998607	125993483812	794748424	118419022087	116392583176	0.000000	0.004510	0.003762	0.000242	150.000000	849298042	0.998777	0	0.500544	0.008160	0.000000