#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA12155/NA12155.cram --algo AlignmentStat 1000G/NA12155/QCmetrics/NA12155.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	368610997	368610997	1.000000	0	368517747	0.999747	54695618144	344899845	51426391132	50648167079	0.000000	0.003931	0.003183	0.000246	150.000000	367887879	0.998291	0	0.500462	0.008178	0.000000	
SECOND_OF_PAIR	368610997	368610997	1.000000	0	367940624	0.998181	54298500537	342607991	50936403221	50007000471	0.000000	0.004501	0.003695	0.000251	150.000000	367887879	0.999857	0	0.500406	0.008628	0.000000	
PAIR	737221994	737221994	1.000000	0	736458371	0.998964	108994118681	687507836	102362794353	100655167550	0.000000	0.004215	0.003438	0.000248	150.000000	735775758	0.999073	0	0.500434	0.008403	0.000000