#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA12249/NA12249.cram --algo AlignmentStat 1000G/NA12249/QCmetrics/NA12249.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	416571894	416571894	1.000000	0	416445911	0.999698	61878134425	392414260	58529579599	57519140342	0.000000	0.004150	0.003549	0.000230	150.000000	415266531	0.997168	0	0.500582	0.007054	0.000000	
SECOND_OF_PAIR	416571894	416571894	1.000000	0	415331300	0.997022	61413152078	388254756	57853815475	56670382604	0.000000	0.004662	0.003956	0.000238	150.000000	415266531	0.999844	0	0.501431	0.007330	0.000000	
PAIR	833143788	833143788	1.000000	0	831777211	0.998360	123291286503	780669016	116383395074	114189522946	0.000000	0.004405	0.003751	0.000234	150.000000	830533062	0.998504	0	0.501006	0.007192	0.000000