#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA12342/NA12342.cram --algo AlignmentStat 1000G/NA12342/QCmetrics/NA12342.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	433418542	433418542	1.000000	0	433342840	0.999825	64386622650	407315800	60750053367	59833248746	0.000000	0.003789	0.003139	0.000235	150.000000	432565273	0.998206	0	0.500510	0.007875	0.000000	
SECOND_OF_PAIR	433418542	433418542	1.000000	0	432616980	0.998151	63887552139	404375914	60126145030	58999055538	0.000000	0.004451	0.003733	0.000239	150.000000	432565273	0.999880	0	0.500508	0.008333	0.000000	
PAIR	866837084	866837084	1.000000	0	865959820	0.998988	128274174789	811691714	120876198397	118832304284	0.000000	0.004119	0.003434	0.000237	150.000000	865130546	0.999042	0	0.500509	0.008104	0.000000