#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA12778/NA12778.cram --algo AlignmentStat 1000G/NA12778/QCmetrics/NA12778.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	348030272	348030272	1.000000	0	347933590	0.999722	51680456173	328651715	49008008131	48286762576	0.000000	0.003748	0.003161	0.000233	150.000000	347083156	0.997556	0	0.500460	0.007517	0.000000	
SECOND_OF_PAIR	348030272	348030272	1.000000	0	347142265	0.997448	51347844415	325584496	48520438893	47684916540	0.000000	0.004131	0.003445	0.000240	150.000000	347083156	0.999830	0	0.501357	0.007738	0.000000	
PAIR	696060544	696060544	1.000000	0	695075855	0.998585	103028300588	654236211	97528447024	95971679116	0.000000	0.003939	0.003302	0.000237	150.000000	694166312	0.998691	0	0.500908	0.007627	0.000000