#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA12812/NA12812.cram --algo AlignmentStat 1000G/NA12812/QCmetrics/NA12812.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	405636141	405636141	1.000000	0	405555864	0.999802	60234247624	380637279	56774472969	55881421193	0.000000	0.003887	0.003186	0.000235	150.000000	404789247	0.998110	0	0.500576	0.006587	0.000000	
SECOND_OF_PAIR	405636141	405636141	1.000000	0	404835318	0.998026	59926849236	378255773	56369803321	55361217245	0.000000	0.004277	0.003509	0.000238	150.000000	404789247	0.999886	0	0.500429	0.006772	0.000000	
PAIR	811272282	811272282	1.000000	0	810391182	0.998914	120161096860	758893052	113144276290	111242638438	0.000000	0.004081	0.003347	0.000237	150.000000	809578494	0.998997	0	0.500502	0.006680	0.000000