#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA18488/NA18488.cram --algo AlignmentStat 1000G/NA18488/QCmetrics/NA18488.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	360052090	360052090	1.000000	0	359944866	0.999702	53435134764	339113948	50546120250	49649749974	0.000000	0.004233	0.003635	0.000252	150.000000	358874480	0.997026	0	0.500534	0.005712	0.000000	
SECOND_OF_PAIR	360052090	360052090	1.000000	0	358934617	0.996896	53062609859	335523055	49995722569	49022275324	0.000000	0.004576	0.003867	0.000260	150.000000	358874480	0.999832	0	0.501606	0.005811	0.000000	
PAIR	720104180	720104180	1.000000	0	718879483	0.998299	106497744623	674637003	100541842819	98672025298	0.000000	0.004403	0.003750	0.000256	150.000000	717748960	0.998427	0	0.501070	0.005762	0.000000