#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA18501/NA18501.cram --algo AlignmentStat 1000G/NA18501/QCmetrics/NA18501.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	325371836	325371836	1.000000	0	325270181	0.999688	48330554725	305486345	45552075112	44775926584	0.000000	0.004443	0.003801	0.000257	150.000000	324414518	0.997369	0	0.500560	0.008204	0.000000	
SECOND_OF_PAIR	325371836	325371836	1.000000	0	324467758	0.997221	47992518770	302617037	45077490100	44163306006	0.000000	0.004938	0.004204	0.000264	150.000000	324414518	0.999836	0	0.501023	0.008574	0.000000	
PAIR	650743672	650743672	1.000000	0	649737939	0.998454	96323073495	608103382	90629565212	88939232590	0.000000	0.004690	0.004002	0.000261	150.000000	648829036	0.998601	0	0.500791	0.008389	0.000000