#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA18534/NA18534.cram --algo AlignmentStat 1000G/NA18534/QCmetrics/NA18534.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	347457585	347457585	1.000000	0	347398771	0.999831	51621477492	325052848	48498337838	47931425150	0.000000	0.003519	0.002774	0.000243	150.000000	346625723	0.997775	0	0.500367	0.006653	0.000000	
SECOND_OF_PAIR	347457585	347457585	1.000000	0	346664289	0.997717	51271453794	322106499	48004712825	47212289732	0.000000	0.004184	0.003346	0.000248	150.000000	346625723	0.999889	0	0.501129	0.006803	0.000000	
PAIR	694915170	694915170	1.000000	0	694063060	0.998774	102892931286	647159347	96503050663	95143714882	0.000000	0.003850	0.003058	0.000246	150.000000	693251446	0.998831	0	0.500747	0.006728	0.000000