#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA18563/NA18563.cram --algo AlignmentStat 1000G/NA18563/QCmetrics/NA18563.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	383895624	383895624	1.000000	0	383822696	0.999810	57041572885	359655735	53648422648	52836713914	0.000000	0.003911	0.003250	0.000231	150.000000	383091999	0.998096	0	0.500658	0.007401	0.000000	
SECOND_OF_PAIR	383895624	383895624	1.000000	0	383135837	0.998021	56730583044	357017233	53217466644	52386094864	0.000000	0.004081	0.003344	0.000237	150.000000	383091999	0.999886	0	0.500415	0.007656	0.000000	
PAIR	767791248	767791248	1.000000	0	766958533	0.998915	113772155929	716672968	106865889292	105222808778	0.000000	0.003996	0.003297	0.000234	150.000000	766183998	0.998990	0	0.500536	0.007529	0.000000