#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA18564/NA18564.cram --algo AlignmentStat 1000G/NA18564/QCmetrics/NA18564.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	386699101	386699101	1.000000	0	386614064	0.999780	57490321659	364647612	54398629554	53605740568	0.000000	0.003872	0.003329	0.000231	150.000000	385738237	0.997735	0	0.500548	0.008355	0.000000	
SECOND_OF_PAIR	386699101	386699101	1.000000	0	385787058	0.997641	57130477675	361775549	53905923874	52938019870	0.000000	0.004390	0.003768	0.000236	150.000000	385738237	0.999873	0	0.500828	0.008808	0.000000	
PAIR	773398202	773398202	1.000000	0	772401122	0.998711	114620799334	726423161	108304553428	106543760438	0.000000	0.004130	0.003548	0.000233	150.000000	771476474	0.998803	0	0.500688	0.008581	0.000000