#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA18593/NA18593.cram --algo AlignmentStat 1000G/NA18593/QCmetrics/NA18593.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	388451765	388451765	1.000000	0	388329469	0.999685	57703126367	367074532	54739095263	53944459798	0.000000	0.003689	0.003145	0.000229	150.000000	387381739	0.997559	0	0.500496	0.006506	0.000000	
SECOND_OF_PAIR	388451765	388451765	1.000000	0	387450878	0.997423	57337924611	363673470	54196949655	53222478058	0.000000	0.004191	0.003539	0.000236	150.000000	387381739	0.999822	0	0.501419	0.006675	0.000000	
PAIR	776903530	776903530	1.000000	0	775780347	0.998554	115041050978	730748002	108936044918	107166937856	0.000000	0.003939	0.003341	0.000233	150.000000	774763478	0.998689	0	0.500957	0.006590	0.000000