#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA18613/NA18613.cram --algo AlignmentStat 1000G/NA18613/QCmetrics/NA18613.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	375121674	375121674	1.000000	0	375015974	0.999718	55685686736	352610122	52551599546	51699339351	0.000000	0.004082	0.003465	0.000231	150.000000	374154826	0.997704	0	0.500450	0.007163	0.000000	
SECOND_OF_PAIR	375121674	375121674	1.000000	0	374221740	0.997601	55404161860	349700456	52124269483	51255035972	0.000000	0.004254	0.003551	0.000237	150.000000	374154826	0.999821	0	0.501013	0.007319	0.000000	
PAIR	750243348	750243348	1.000000	0	749237714	0.998660	111089848596	702310578	104675869029	102954375323	0.000000	0.004168	0.003508	0.000234	150.000000	748309652	0.998761	0	0.500731	0.007241	0.000000