#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA18621/NA18621.cram --algo AlignmentStat 1000G/NA18621/QCmetrics/NA18621.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	351296143	351296143	1.000000	0	351194707	0.999711	52144577786	329717255	49145524892	48210726853	0.000000	0.004634	0.003922	0.000235	150.000000	350424630	0.997807	0	0.500527	0.007314	0.000000	
SECOND_OF_PAIR	351296143	351296143	1.000000	0	350483357	0.997686	51866667757	327202532	48753180867	47806512440	0.000000	0.004719	0.003930	0.000241	150.000000	350424630	0.999832	0	0.500564	0.007533	0.000000	
PAIR	702592286	702592286	1.000000	0	701678064	0.998699	104011245543	656919787	97898705759	96017239293	0.000000	0.004676	0.003926	0.000238	150.000000	700849260	0.998819	0	0.500546	0.007424	0.000000