#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA18632/NA18632.cram --algo AlignmentStat 1000G/NA18632/QCmetrics/NA18632.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	367741915	367741915	1.000000	0	367651497	0.999754	54635353673	345448120	51532608214	50766602701	0.000000	0.003930	0.003240	0.000231	150.000000	366892769	0.997936	0	0.500490	0.006213	0.000000	
SECOND_OF_PAIR	367741915	367741915	1.000000	0	366941111	0.997822	54328889781	342941676	51115561980	50210423301	0.000000	0.004373	0.003606	0.000235	150.000000	366892769	0.999868	0	0.500660	0.006307	0.000000	
PAIR	735483830	735483830	1.000000	0	734592608	0.998788	108964243454	688389796	102648170194	100977026002	0.000000	0.004151	0.003423	0.000233	150.000000	733785538	0.998901	0	0.500575	0.006260	0.000000