#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA18647/NA18647.cram --algo AlignmentStat 1000G/NA18647/QCmetrics/NA18647.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	374989995	374989995	1.000000	0	374896737	0.999751	55679871753	351856462	52469016401	51721907112	0.000000	0.003881	0.003183	0.000240	150.000000	374165137	0.998049	0	0.500497	0.006941	0.000000	
SECOND_OF_PAIR	374989995	374989995	1.000000	0	374222276	0.997953	55227851275	349339539	51912888534	50818708441	0.000000	0.005076	0.004312	0.000248	150.000000	374165137	0.999847	0	0.500613	0.007656	0.000000	
PAIR	749979990	749979990	1.000000	0	749119013	0.998852	110907723028	701196001	104381904935	102540615553	0.000000	0.004476	0.003744	0.000244	150.000000	748330274	0.998947	0	0.500555	0.007299	0.000000