#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA18748/NA18748.cram --algo AlignmentStat 1000G/NA18748/QCmetrics/NA18748.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	413986859	413986859	1.000000	0	413851796	0.999674	61515987549	388569867	57972224557	57071725746	0.000000	0.003929	0.003281	0.000232	150.000000	412493314	0.996717	0	0.500577	0.005587	0.000000	
SECOND_OF_PAIR	413986859	413986859	1.000000	0	412548501	0.996526	60945014096	384948129	57254025653	55813457895	0.000000	0.006193	0.005452	0.000234	150.000000	412493314	0.999866	0	0.501083	0.005858	0.000000	
PAIR	827973718	827973718	1.000000	0	826400297	0.998100	122461001645	773517996	115226250210	112885183641	0.000000	0.005056	0.004360	0.000233	150.000000	824986628	0.998289	0	0.500829	0.005722	0.000000