#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA18876/NA18876.cram --algo AlignmentStat 1000G/NA18876/QCmetrics/NA18876.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	368629877	368629877	1.000000	0	368554829	0.999796	54810385530	347134331	51807893053	51201274372	0.000000	0.003554	0.002996	0.000260	150.000000	367324176	0.996661	0	0.500628	0.007856	0.000000	
SECOND_OF_PAIR	368629877	368629877	1.000000	0	367363716	0.996565	54225021983	343427398	51071068315	50083572106	0.000000	0.005874	0.005215	0.000264	150.000000	367324176	0.999892	0	0.501316	0.008385	0.000000	
PAIR	737259754	737259754	1.000000	0	735918545	0.998181	109035407513	690561729	102878961368	101284846478	0.000000	0.004708	0.004098	0.000262	150.000000	734648352	0.998274	0	0.500972	0.008120	0.000000