#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA18962/NA18962.cram --algo AlignmentStat 1000G/NA18962/QCmetrics/NA18962.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	380897176	380897176	1.000000	0	380810546	0.999773	56608374708	358016126	53415471746	52651208955	0.000000	0.003847	0.003179	0.000235	150.000000	380025589	0.997939	0	0.500474	0.006997	0.000002	
SECOND_OF_PAIR	380897176	380897176	1.000000	0	380080087	0.997855	56285262365	355733657	52986324294	51782133189	0.000000	0.005086	0.004341	0.000236	150.000000	380025589	0.999857	0	0.500873	0.007273	0.000000	
PAIR	761794352	761794352	1.000000	0	760890633	0.998814	112893637073	713749783	106401796040	104433342144	0.000000	0.004465	0.003758	0.000235	150.000000	760051178	0.998897	0	0.500673	0.007135	0.000001