#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA18982/NA18982.cram --algo AlignmentStat 1000G/NA18982/QCmetrics/NA18982.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	341238378	341238378	1.000000	0	341131496	0.999687	50654091843	319419920	47617373954	46673023674	0.000000	0.004652	0.003971	0.000228	150.000000	340357029	0.997730	0	0.500479	0.007518	0.000000	
SECOND_OF_PAIR	341238378	341238378	1.000000	0	340416361	0.997591	50337903351	316826396	47185465882	46240523930	0.000000	0.004735	0.003964	0.000234	150.000000	340357029	0.999826	0	0.500721	0.007871	0.000000	
PAIR	682476756	682476756	1.000000	0	681547857	0.998639	100991995194	636246316	94802839836	92913547604	0.000000	0.004693	0.003968	0.000231	150.000000	680714058	0.998777	0	0.500600	0.007694	0.000000