#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19003/NA19003.cram --algo AlignmentStat 1000G/NA19003/QCmetrics/NA19003.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	352196241	352196241	1.000000	0	352105977	0.999744	52371188543	332709522	49644112400	48894694757	0.000000	0.003679	0.003168	0.000225	150.000000	351286635	0.997673	0	0.500704	0.005666	0.000000	
SECOND_OF_PAIR	352196241	352196241	1.000000	0	351331676	0.997545	52044632901	329881818	49181228116	48290548442	0.000000	0.004167	0.003563	0.000230	150.000000	351286635	0.999872	0	0.500941	0.005776	0.000000	
PAIR	704392482	704392482	1.000000	0	703437653	0.998644	104415821444	662591340	98825340516	97185243199	0.000000	0.003922	0.003364	0.000227	150.000000	702573270	0.998771	0	0.500822	0.005721	0.000000