#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19010/NA19010.cram --algo AlignmentStat 1000G/NA19010/QCmetrics/NA19010.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	396705413	396705413	1.000000	0	396552326	0.999614	58884008002	373307477	55629206194	54406051335	0.000000	0.004881	0.004348	0.000224	150.000000	395466387	0.997262	0	0.500609	0.006500	0.000000	
SECOND_OF_PAIR	396705413	396705413	1.000000	0	395552429	0.997094	58519339832	369820352	55102332472	53917044607	0.000000	0.004739	0.004114	0.000231	150.000000	395466387	0.999782	0	0.500932	0.006654	0.000000	
PAIR	793410826	793410826	1.000000	0	792104755	0.998354	117403347834	743127829	110731538666	108323095942	0.000000	0.004810	0.004231	0.000228	150.000000	790932774	0.998520	0	0.500770	0.006577	0.000000