#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19023/NA19023.cram --algo AlignmentStat 1000G/NA19023/QCmetrics/NA19023.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	385488660	385488660	1.000000	0	385348058	0.999635	57261223484	363663537	54227663466	53162214358	0.000000	0.004632	0.004095	0.000259	150.000000	384181672	0.996973	0	0.500667	0.007663	0.000000	
SECOND_OF_PAIR	385488660	385488660	1.000000	0	384243201	0.996769	56765552301	360436578	53594728310	52121045161	0.000000	0.005902	0.005280	0.000263	150.000000	384181672	0.999840	0	0.500974	0.007992	0.000000	
PAIR	770977320	770977320	1.000000	0	769591259	0.998202	114026775785	724100115	107822391776	105283259519	0.000000	0.005264	0.004684	0.000261	150.000000	768363344	0.998404	0	0.500821	0.007827	0.000000