#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19035/NA19035.cram --algo AlignmentStat 1000G/NA19035/QCmetrics/NA19035.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	403571416	403571416	1.000000	0	403486375	0.999789	59992406204	379338641	56609321465	55847573249	0.000000	0.003797	0.003142	0.000267	150.000000	402398119	0.997303	0	0.500489	0.007241	0.000002	
SECOND_OF_PAIR	403571416	403571416	1.000000	0	402450993	0.997224	59521377801	376697580	56042544902	54912274121	0.000000	0.004758	0.004034	0.000269	150.000000	402398119	0.999869	0	0.500817	0.007655	0.000000	
PAIR	807142832	807142832	1.000000	0	805937368	0.998507	119513784005	756036221	112651866367	110759847370	0.000000	0.004276	0.003586	0.000268	150.000000	804796238	0.998584	0	0.500653	0.007448	0.000001