#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19059/NA19059.cram --algo AlignmentStat 1000G/NA19059/QCmetrics/NA19059.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	387821472	387821472	1.000000	0	387713495	0.999722	57617770975	365686598	54537622105	53720975835	0.000000	0.003781	0.003235	0.000234	150.000000	386767907	0.997561	0	0.500600	0.007201	0.000000	
SECOND_OF_PAIR	387821472	387821472	1.000000	0	386825273	0.997431	57252550609	362531448	54024424124	53022440497	0.000000	0.004330	0.003694	0.000241	150.000000	386767907	0.999852	0	0.501011	0.007492	0.000000	
PAIR	775642944	775642944	1.000000	0	774538768	0.998576	114870321584	728218046	108562046229	106743416332	0.000000	0.004055	0.003463	0.000238	150.000000	773535814	0.998705	0	0.500805	0.007346	0.000000