#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19064/NA19064.cram --algo AlignmentStat 1000G/NA19064/QCmetrics/NA19064.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	395011833	395011833	1.000000	0	394929091	0.999791	58712562165	370851732	55348390266	54549275847	0.000000	0.003647	0.003026	0.000248	150.000000	393837554	0.997236	0	0.500711	0.005957	0.000000	
SECOND_OF_PAIR	395011833	395011833	1.000000	0	393883353	0.997143	58231124348	367759344	54746570443	53760452597	0.000000	0.004201	0.003504	0.000251	150.000000	393837554	0.999884	0	0.500688	0.006197	0.000000	
PAIR	790023666	790023666	1.000000	0	788812444	0.998467	116943686513	738611076	110094960709	108309728444	0.000000	0.003923	0.003264	0.000249	150.000000	787675108	0.998558	0	0.500699	0.006077	0.000000