#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19074/NA19074.cram --algo AlignmentStat 1000G/NA19074/QCmetrics/NA19074.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	377274972	377274972	1.000000	0	377088863	0.999507	55960042417	355799831	52995678975	51644270511	0.000000	0.005286	0.004746	0.000221	150.000000	376013297	0.997148	0	0.500642	0.006160	0.000000	
SECOND_OF_PAIR	377274972	377274972	1.000000	0	376106189	0.996902	55630452929	352772373	52534470100	51166127607	0.000000	0.005380	0.004757	0.000228	150.000000	376013297	0.999753	0	0.500832	0.006260	0.000000	
PAIR	754549944	754549944	1.000000	0	753195052	0.998204	111590495346	708572204	105530149075	102810398118	0.000000	0.005333	0.004752	0.000224	150.000000	752026594	0.998449	0	0.500737	0.006210	0.000000