#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19077/NA19077.cram --algo AlignmentStat 1000G/NA19077/QCmetrics/NA19077.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	375227814	375227814	1.000000	0	375131786	0.999744	55779824705	353762513	52773827221	51973607807	0.000000	0.003680	0.003165	0.000227	150.000000	374327152	0.997855	0	0.500596	0.006074	0.000000	
SECOND_OF_PAIR	375227814	375227814	1.000000	0	374383873	0.997751	55299187150	350903083	52168725491	51047538838	0.000000	0.004892	0.004303	0.000237	150.000000	374327152	0.999848	0	0.500810	0.006712	0.000000	
PAIR	750455628	750455628	1.000000	0	749515659	0.998747	111079011855	704665596	104942552712	103021146645	0.000000	0.004283	0.003731	0.000232	150.000000	748654304	0.998851	0	0.500703	0.006393	0.000000