#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19079/NA19079.cram --algo AlignmentStat 1000G/NA19079/QCmetrics/NA19079.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	546269189	546269189	1.000000	0	546123755	0.999734	81203355820	513382333	76601852706	75325619305	0.000000	0.004141	0.003510	0.000231	150.000000	544346925	0.996746	0	0.500496	0.005944	0.000000	
SECOND_OF_PAIR	546269189	546269189	1.000000	0	544418152	0.996611	80418900363	508314116	75622186857	73980939621	0.000000	0.005934	0.005217	0.000235	150.000000	544346925	0.999869	0	0.500886	0.006294	0.000000	
PAIR	1092538378	1092538378	1.000000	0	1090541907	0.998173	161622256183	1021696449	152224039563	149306558926	0.000000	0.005033	0.004358	0.000233	150.000000	1088693850	0.998305	0	0.500691	0.006119	0.000000