#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19081/NA19081.cram --algo AlignmentStat 1000G/NA19081/QCmetrics/NA19081.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	357418106	357418106	1.000000	0	357339596	0.999780	53114304601	337294958	50309960106	49573659185	0.000000	0.003659	0.003108	0.000229	150.000000	356532008	0.997740	0	0.500549	0.006219	0.000000	
SECOND_OF_PAIR	357418106	357418106	1.000000	0	356585466	0.997670	52813395327	334692480	49874415148	48835969567	0.000000	0.004492	0.003846	0.000233	150.000000	356532008	0.999850	0	0.501267	0.006396	0.000000	
PAIR	714836212	714836212	1.000000	0	713925062	0.998725	105927699928	671987438	100184375254	98409628752	0.000000	0.004074	0.003475	0.000231	150.000000	713064016	0.998794	0	0.500907	0.006307	0.000000