#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19082/NA19082.cram --algo AlignmentStat 1000G/NA19082/QCmetrics/NA19082.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	350366960	350366960	1.000000	0	350294389	0.999793	52096028303	329492279	49175388142	48475978415	0.000000	0.003680	0.003035	0.000241	150.000000	349143223	0.996714	0	0.500541	0.007475	0.000000	
SECOND_OF_PAIR	350366960	350366960	1.000000	0	349182990	0.996621	51565781630	325735327	48481239583	47666086112	0.000000	0.004166	0.003417	0.000249	150.000000	349143223	0.999886	0	0.501173	0.007860	0.000000	
PAIR	700733920	700733920	1.000000	0	699477379	0.998207	103661809933	655227606	97656627725	96142064527	0.000000	0.003922	0.003225	0.000245	150.000000	698286446	0.998297	0	0.500857	0.007667	0.000000