#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19086/NA19086.cram --algo AlignmentStat 1000G/NA19086/QCmetrics/NA19086.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	380150926	380150926	1.000000	0	380070990	0.999790	56505056380	356682030	53220624804	52424160575	0.000000	0.003830	0.003199	0.000235	150.000000	379311743	0.998002	0	0.500593	0.006350	0.000000	
SECOND_OF_PAIR	380150926	380150926	1.000000	0	379357788	0.997914	56171156707	354150320	52777703045	51764458072	0.000000	0.004466	0.003758	0.000238	150.000000	379311743	0.999879	0	0.500681	0.006531	0.000000	
PAIR	760301852	760301852	1.000000	0	759428778	0.998852	112676213087	710832350	105998327849	104188618647	0.000000	0.004147	0.003477	0.000236	150.000000	758623486	0.998940	0	0.500637	0.006440	0.000000