#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19087/NA19087.cram --algo AlignmentStat 1000G/NA19087/QCmetrics/NA19087.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	380626778	380626778	1.000000	0	380532654	0.999753	56538925666	357772599	53354223013	52570674464	0.000000	0.003722	0.003148	0.000230	150.000000	379639716	0.997653	0	0.500618	0.006448	0.000000	
SECOND_OF_PAIR	380626778	380626778	1.000000	0	379702888	0.997573	56192917311	354483805	52837623916	51916782753	0.000000	0.004137	0.003459	0.000237	150.000000	379639716	0.999834	0	0.501253	0.006572	0.000000	
PAIR	761253556	761253556	1.000000	0	760235542	0.998663	112731842977	712256404	106191846929	104487457217	0.000000	0.003929	0.003303	0.000234	150.000000	759279432	0.998742	0	0.500935	0.006510	0.000000