#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19131/NA19131.cram --algo AlignmentStat 1000G/NA19131/QCmetrics/NA19131.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	448675070	448675070	1.000000	0	448575183	0.999777	66625155025	421926180	62922492011	62049357436	0.000000	0.003940	0.003299	0.000268	150.000000	447781908	0.998232	0	0.500572	0.007182	0.000000	
SECOND_OF_PAIR	448675070	448675070	1.000000	0	447842604	0.998145	66295771926	419026552	62458021435	61474242015	0.000000	0.004201	0.003488	0.000273	150.000000	447781908	0.999864	0	0.500537	0.007439	0.000000	
PAIR	897350140	897350140	1.000000	0	896417787	0.998961	132920926951	840952732	125380513446	123523599451	0.000000	0.004070	0.003393	0.000271	150.000000	895563816	0.999047	0	0.500555	0.007311	0.000000