#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19149/NA19149.cram --algo AlignmentStat 1000G/NA19149/QCmetrics/NA19149.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	368877123	368877123	1.000000	0	368800896	0.999793	54821283389	348038931	51933753925	51221095316	0.000000	0.003769	0.003175	0.000258	150.000000	367823550	0.997350	0	0.500654	0.006248	0.000000	
SECOND_OF_PAIR	368877123	368877123	1.000000	0	367866517	0.997260	54381066963	344775145	51356772709	50430634031	0.000000	0.004422	0.003736	0.000262	150.000000	367823550	0.999883	0	0.500818	0.006382	0.000000	
PAIR	737754246	737754246	1.000000	0	736667413	0.998527	109202350352	692814076	103290526634	101651729347	0.000000	0.004094	0.003454	0.000260	150.000000	735647100	0.998615	0	0.500736	0.006315	0.000000