#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19239/NA19239.cram --algo AlignmentStat 1000G/NA19239/QCmetrics/NA19239.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	361845228	361845228	1.000000	0	361749079	0.999734	53665603439	338493162	50437574150	49559009210	0.000000	0.004459	0.003727	0.000263	150.000000	360919407	0.997706	0	0.500503	0.008639	0.000000	
SECOND_OF_PAIR	361845228	361845228	1.000000	0	360976987	0.997601	53369789943	335857759	50025350516	49118058054	0.000000	0.004630	0.003818	0.000269	150.000000	360919407	0.999840	0	0.500809	0.008955	0.000000	
PAIR	723690456	723690456	1.000000	0	722726066	0.998667	107035393382	674350921	100462924666	98677067264	0.000000	0.004544	0.003773	0.000266	150.000000	721838814	0.998772	0	0.500656	0.008797	0.000000