#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19308/NA19308.cram --algo AlignmentStat 1000G/NA19308/QCmetrics/NA19308.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	518506698	518506698	1.000000	0	518240499	0.999487	77000258930	485660730	72446246972	71411578897	0.000000	0.004329	0.003646	0.000261	150.000000	516865384	0.997347	0	0.500505	0.006361	0.000001	
SECOND_OF_PAIR	518506698	518506698	1.000000	0	516949268	0.996996	76402301077	481399757	71659934172	70224648699	0.000000	0.005333	0.004561	0.000264	150.000000	516865384	0.999838	0	0.501055	0.006522	0.000000	
PAIR	1037013396	1037013396	1.000000	0	1035189767	0.998241	153402560007	967060487	144106181144	141636227596	0.000000	0.004829	0.004101	0.000262	150.000000	1033730768	0.998591	0	0.500780	0.006441	0.000000