#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19309/NA19309.cram --algo AlignmentStat 1000G/NA19309/QCmetrics/NA19309.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	341658524	341658524	1.000000	0	341570983	0.999744	50704411356	319969457	47697568176	46812169521	0.000000	0.004565	0.003816	0.000263	150.000000	340836538	0.997850	0	0.500421	0.007109	0.000000	
SECOND_OF_PAIR	341658524	341658524	1.000000	0	340888257	0.997746	50318063858	317412063	47194181914	46159850852	0.000000	0.005123	0.004298	0.000268	150.000000	340836538	0.999848	0	0.500788	0.007392	0.000000	
PAIR	683317048	683317048	1.000000	0	682459240	0.998745	101022475214	637381520	94891750090	92972020373	0.000000	0.004843	0.004056	0.000266	150.000000	681673076	0.998848	0	0.500604	0.007250	0.000000