#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19321/NA19321.cram --algo AlignmentStat 1000G/NA19321/QCmetrics/NA19321.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	384635181	384635181	1.000000	0	384560121	0.999805	57156385216	362266984	54058342771	53436056392	0.000000	0.003498	0.002874	0.000270	150.000000	383661030	0.997662	0	0.500562	0.006518	0.000000	
SECOND_OF_PAIR	384635181	384635181	1.000000	0	383704548	0.997580	56737407570	358651033	53457997679	52636292799	0.000000	0.004063	0.003338	0.000274	150.000000	383661030	0.999887	0	0.501210	0.006670	0.000000	
PAIR	769270362	769270362	1.000000	0	768264669	0.998693	113893792786	720918017	107516340450	106072349191	0.000000	0.003780	0.003105	0.000272	150.000000	767322060	0.998773	0	0.500886	0.006594	0.000000