#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19397/NA19397.cram --algo AlignmentStat 1000G/NA19397/QCmetrics/NA19397.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	371754084	371754084	1.000000	0	371678897	0.999798	55248830233	348174571	51945501490	51186877355	0.000000	0.004021	0.003355	0.000263	150.000000	370905953	0.997920	0	0.500537	0.007076	0.000000	
SECOND_OF_PAIR	371754084	371754084	1.000000	0	370952047	0.997843	54896218584	345399898	51470208157	50524557663	0.000000	0.004591	0.003845	0.000267	150.000000	370905953	0.999876	0	0.500622	0.007266	0.000000	
PAIR	743508168	743508168	1.000000	0	742630944	0.998820	110145048817	693574469	103415709647	101711435018	0.000000	0.004305	0.003599	0.000265	150.000000	741811906	0.998897	0	0.500579	0.007171	0.000000