#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19399/NA19399.cram --algo AlignmentStat 1000G/NA19399/QCmetrics/NA19399.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	368347073	368347073	1.000000	0	368285087	0.999832	54735285201	346022413	51642899711	51072403787	0.000000	0.003447	0.002778	0.000273	150.000000	367422261	0.997657	0	0.500593	0.005623	0.000000	
SECOND_OF_PAIR	368347073	368347073	1.000000	0	367461721	0.997596	54346232815	342756873	51095281866	50247938209	0.000000	0.004201	0.003435	0.000276	150.000000	367422261	0.999893	0	0.501127	0.005725	0.000000	
PAIR	736694146	736694146	1.000000	0	735746808	0.998714	109081518016	688779286	102738181577	101320341996	0.000000	0.003822	0.003105	0.000275	150.000000	734844522	0.998774	0	0.500860	0.005674	0.000000