#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19403/NA19403.cram --algo AlignmentStat 1000G/NA19403/QCmetrics/NA19403.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	382081151	382081151	1.000000	0	382008387	0.999810	56804485107	359624112	53666247310	52932876846	0.000000	0.003807	0.003237	0.000262	150.000000	381181742	0.997836	0	0.500697	0.006783	0.000000	
SECOND_OF_PAIR	382081151	382081151	1.000000	0	381226420	0.997763	56432840294	356619941	53157361859	52212237037	0.000000	0.004416	0.003764	0.000267	150.000000	381181742	0.999883	0	0.500560	0.006927	0.000000	
PAIR	764162302	764162302	1.000000	0	763234807	0.998786	113237325401	716244053	106823609169	105145113883	0.000000	0.004110	0.003499	0.000265	150.000000	762363484	0.998858	0	0.500628	0.006855	0.000000