#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19451/NA19451.cram --algo AlignmentStat 1000G/NA19451/QCmetrics/NA19451.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	379283574	379283574	1.000000	0	379188711	0.999750	56337807804	355453111	53023221757	52290147500	0.000000	0.004009	0.003297	0.000265	150.000000	378524389	0.998248	0	0.500512	0.006697	0.000002	
SECOND_OF_PAIR	379283574	379283574	1.000000	0	378576270	0.998135	56045454020	353343916	52644513976	51677747446	0.000000	0.004647	0.003873	0.000266	150.000000	378524389	0.999863	0	0.500378	0.006808	0.000000	
PAIR	758567148	758567148	1.000000	0	757764981	0.998943	112383261824	708797027	105667735733	103967894946	0.000000	0.004327	0.003584	0.000266	150.000000	757048778	0.999055	0	0.500445	0.006752	0.000001