#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19455/NA19455.cram --algo AlignmentStat 1000G/NA19455/QCmetrics/NA19455.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	351855629	351855629	1.000000	0	351781398	0.999789	52250017824	329212532	49108968563	48424487734	0.000000	0.004108	0.003365	0.000273	150.000000	351109193	0.998089	0	0.500591	0.006584	0.000000	
SECOND_OF_PAIR	351855629	351855629	1.000000	0	351153723	0.998005	51963723895	326964495	48721114669	47851078622	0.000000	0.004752	0.003939	0.000276	150.000000	351109193	0.999873	0	0.500546	0.006721	0.000000	
PAIR	703711258	703711258	1.000000	0	702935121	0.998897	104213741719	656177027	97830083232	96275566356	0.000000	0.004429	0.003651	0.000274	150.000000	702218386	0.998980	0	0.500568	0.006652	0.000000