#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19661/NA19661.cram --algo AlignmentStat 1000G/NA19661/QCmetrics/NA19661.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	360336996	360336996	1.000000	0	360256139	0.999776	53531401351	338680943	50528322773	49897433723	0.000000	0.003865	0.003181	0.000245	150.000000	359427863	0.997701	0	0.500519	0.007493	0.000000	
SECOND_OF_PAIR	360336996	360336996	1.000000	0	359471497	0.997598	53157114570	335483101	49993904096	49206813876	0.000000	0.004348	0.003569	0.000250	150.000000	359427863	0.999879	0	0.501012	0.007748	0.000000	
PAIR	720673992	720673992	1.000000	0	719727636	0.998687	106688515921	674164044	100522226869	99104247599	0.000000	0.004106	0.003374	0.000248	150.000000	718855726	0.998789	0	0.500765	0.007621	0.000000