#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19704/NA19704.cram --algo AlignmentStat 1000G/NA19704/QCmetrics/NA19704.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	365188875	365188875	1.000000	0	365119237	0.999809	54256323823	343817908	51312685642	50633063828	0.000000	0.003893	0.003248	0.000267	150.000000	364059679	0.997098	0	0.500763	0.007033	0.000000	
SECOND_OF_PAIR	365188875	365188875	1.000000	0	364094089	0.997002	53730954112	341205643	50712538271	49716898947	0.000000	0.004945	0.004237	0.000267	150.000000	364059679	0.999905	0	0.500389	0.007448	0.000000	
PAIR	730377750	730377750	1.000000	0	729213326	0.998406	107987277935	685023551	102025223913	100349962775	0.000000	0.004416	0.003739	0.000267	150.000000	728119358	0.998500	0	0.500576	0.007240	0.000000