#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19764/NA19764.cram --algo AlignmentStat 1000G/NA19764/QCmetrics/NA19764.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	360685727	360685727	1.000000	0	360631921	0.999851	53589250322	339384486	50649563706	50086660478	0.000000	0.003327	0.002663	0.000250	150.000000	359859056	0.997857	0	0.500658	0.006253	0.000000	
SECOND_OF_PAIR	360685727	360685727	1.000000	0	359894961	0.997808	53222098058	336319860	50137158012	49389713694	0.000000	0.003869	0.003118	0.000254	150.000000	359859056	0.999900	0	0.500840	0.006389	0.000000	
PAIR	721371454	721371454	1.000000	0	720526882	0.998829	106811348380	675704346	100786721718	99476374172	0.000000	0.003597	0.002890	0.000252	150.000000	719718112	0.998878	0	0.500749	0.006321	0.000000